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Apoc2 apolipoprotein C2 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100135480, updated on 8-Mar-2024

Summary

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Gene symbol
Apoc2
Gene description
apolipoprotein C2
See related
Ensembl:ENSCPOG00000009302
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Apoc2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947490.1 (22886672..22888665)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176339.1 (5375955..5377900)

NW_026947490.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein C1 Neighboring gene apolipoprotein C4 Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene RELB proto-oncogene, NF-kB subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Demonstration of apolipoprotein CII in guinea pigs. Functional characteristics, cDNA sequence, and tissue expression. Andersson Y, et al. J Biol Chem, 1991 Mar 5. PMID 1999402
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipoprotein lipase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chylomicron remnant clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in high-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of lipoprotein lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chylomicron IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intermediate-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spherical high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein C-II
Names
apo-CII
apoC-II

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172914.2 → NP_001166385.1  apolipoprotein C-II precursor

    See identical proteins and their annotated locations for NP_001166385.1

    Status: PROVISIONAL

    Source sequence(s)
    M59913
    UniProtKB/Swiss-Prot
    P27916
    Conserved Domains (1) summary
    pfam05355
    Location:27 → 98
    Apo-CII; Apolipoprotein C-II

RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947490.1 Reference mCavPor4.1

    Range
    22886672..22888665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013146781.3 → XP_013002235.1  apolipoprotein C-II isoform X1

    See identical proteins and their annotated locations for XP_013002235.1

    UniProtKB/Swiss-Prot
    P27916
    Related
    ENSCPOP00000019331.1
    Conserved Domains (1) summary
    pfam05355
    Location:27 → 98
    Apo-CII; Apolipoprotein C-II
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P27916.1 GenPept UniProtKB/Swiss-Prot:P27916

Gene LinkOut

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