U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MDC mevalonate disphosphate decarboxylase 2 [ Solanum lycopersicum (tomato) ]

Gene ID: 100134900, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
MDC
Gene description
mevalonate disphosphate decarboxylase 2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
MPPDC2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MDC in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 11 NC_015448.3 (1510058..1515690)
102 previous assembly SL2.50 (GCF_000188115.3) 11 NC_015448.2 (1510020..1515652)

Chromosome 11 - NC_015448.3Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX15 Neighboring gene proline-, glutamic acid- and leucine-rich protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC101244140 Neighboring gene uncharacterized LOC101243844 Neighboring gene uncharacterized LOC101244437

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Nakayasu M, et al. Plant J, 2018 Jun. PMID 29569783
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables diphosphomevalonate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
mevalonate disphosphate decarboxylase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247886.2 → NP_001234815.1  mevalonate disphosphate decarboxylase 2

    See identical proteins and their annotated locations for NP_001234815.1

    Status: VALIDATED

    Source sequence(s)
    AK327299
    UniProtKB/TrEMBL
    A8WBX7
    Conserved Domains (1) summary
    PLN02407
    Location:10 → 351
    PLN02407; diphosphomevalonate decarboxylase

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015448.3 Reference SL3.0 Primary Assembly

    Range
    1510058..1515690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases