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LOC100132179 solute carrier family 35 member E3 pseudogene [ Homo sapiens (human) ]

Gene ID: 100132179, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100132179
Gene description
solute carrier family 35 member E3 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100132179 in Genome Data Viewer
Location:
1q41
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (221549961..221550660, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (220789773..220790472, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (221723303..221724002, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372932 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:221508768-221509967 Neighboring gene long intergenic non-protein coding RNA 2817 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:221613046-221614245 Neighboring gene uncharacterized LOC105372934 Neighboring gene uncharacterized LOC107985462 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:221728686-221729186 Neighboring gene uncharacterized LOC105372937 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:221750608-221750764 Neighboring gene Sharpr-MPRA regulatory region 4850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2560 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:221887070-221888269 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221888831-221889360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2561 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221915139-221915776 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:221914501-221915138 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1830 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2562 Neighboring gene dual specificity phosphatase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022753.3 

    Range
    101..800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    221549961..221550660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    220789773..220790472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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