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ZNF236-DT ZNF236 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100131655, updated on 10-Oct-2023

Summary

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Official Symbol
ZNF236-DTprovided by HGNC
Official Full Name
ZNF236 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53779
See related
Ensembl:ENSG00000264278 AllianceGenome:HGNC:53779
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ZNF236-DT in Genome Data Viewer
Location:
18q23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76794732..76822295, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (77023557..77051067, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74506688..74534251, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74468849-74469349 Neighboring gene cyclin D3 pseudogene 2 Neighboring gene uncharacterized LOC124904327 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:74503764-74503939 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9558 Neighboring gene RNA, U6 small nuclear 346, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13514 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13515 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9561 Neighboring gene zinc finger protein 236 Neighboring gene uncharacterized LOC105372214 Neighboring gene ribosomal protein L26 pseudogene 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040024.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027575, BC032908
    Related
    ENST00000585258.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    76794732..76822295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    77023557..77051067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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