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LINC02901 long intergenic non-protein coding RNA 2901 [ Homo sapiens (human) ]

Gene ID: 100130967, updated on 8-Mar-2024

Summary

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Official Symbol
LINC02901provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2901provided by HGNC
Primary source
HGNC:HGNC:21179
See related
Ensembl:ENSG00000203711 AllianceGenome:HGNC:21179
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf99
Expression
Restricted expression toward testis (RPKM 17.6) See more
Orthologs
all
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Genomic context

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Location:
6q25.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (158869814..158910353)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (160115224..160155759)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (159290846..159331385)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ezrin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17744 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17745 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25369 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159245802-159246776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25370 Neighboring gene EZR antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159256297-159256987 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159256988-159257678 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159273679-159274204 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159274205-159274730 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159274731-159275254 Neighboring gene uncharacterized LOC124901448 Neighboring gene oligosaccharyltransferase complex subunit pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159275781-159276305 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159276306-159276830 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159289820-159290492 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159290493-159291165 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:159291166-159291839 Neighboring gene MPRA-validated peak6275 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159314985-159315685 Neighboring gene MPRA-validated peak6276 silencer Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159331041-159331834 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:159331835-159332628 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) pseudogene Neighboring gene RNA, U6 small nuclear 293, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence and analysis of human chromosome 6. Mungall AJ, et al. Nature, 2003 Oct 23. PMID 14574404
  2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. Khanna R, et al. FEBS J, 2018 Jun. PMID 29676528
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160976.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000653976.2

  2. NR_160977.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000663340.1

  3. NR_160978.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000486232.2

  4. NR_160979.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422

  5. NR_160980.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000666927.1

  6. NR_160981.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000655791.1

  7. NR_160982.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627422
    Related
    ENST00000650421.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    158869814..158910353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    160115224..160155759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001195032.1: Suppressed sequence

    Description
    NM_001195032.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_001302839.1: Suppressed sequence

    Description
    NM_001302839.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_001302840.1: Suppressed sequence

    Description
    NM_001302840.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  4. NM_001302841.1: Suppressed sequence

    Description
    NM_001302841.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  5. NM_001366493.1: Suppressed sequence

    Description
    NM_001366493.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  6. NM_001366494.1: Suppressed sequence

    Description
    NM_001366494.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  7. NM_001366495.1: Suppressed sequence

    Description
    NM_001366495.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4VX62.1 GenPept UniProtKB/Swiss-Prot:Q4VX62

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