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LINC02881 long intergenic non-protein coding RNA 2881 [ Homo sapiens (human) ]

Gene ID: 100130539, updated on 8-Mar-2024

Summary

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Official Symbol
LINC02881provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2881provided by HGNC
Primary source
HGNC:HGNC:51236
See related
Ensembl:ENSG00000277288 AllianceGenome:HGNC:51236
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf142
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
10q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (44292750..44294649)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (45173595..45175493)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (44788198..44790097)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2659 Neighboring gene long intergenic non-protein coding RNA 841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44475579-44476080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44476081-44476580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44501255-44501828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3305 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44510639-44511138 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44537391-44537911 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12630 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12643 Neighboring gene uncharacterized LOC124902543 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44607592-44608157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12798 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12804 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:44664362-44665561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44688953-44689454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44689455-44689954 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3307 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44703238-44703811 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44728896-44729550 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44729551-44730205 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:44730206-44730859 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13072 Neighboring gene VISTA enhancer hs2509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3311 Neighboring gene uncharacterized LOC124902544 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44793368-44793869 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:44796158-44797357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3312 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44805333-44805502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44806263-44806765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2339 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44821405-44821620 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:44833715-44834216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44852471-44853402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44860047-44860546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44859545-44860046 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44866272-44866820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44873825-44874771 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878101-44878794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878795-44879488 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44879489-44880180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2340 Neighboring gene uncharacterized LOC107984179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44890534-44891279 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44891280-44892024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44894259-44895003 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895004-44895748 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895749-44896492 Neighboring gene C-X-C motif chemokine ligand 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genomewide association analysis of coronary artery disease. Samani NJ, et al. N Engl J Med, 2007 Aug 2. PMID 17634449, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Other Names

  • uncharacterized protein C10orf142

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164139.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137026
    Related
    ENST00000649743.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    44292750..44294649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    45173595..45175493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001258000.1: Suppressed sequence

    Description
    NM_001258000.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B7Z368.1 GenPept UniProtKB/Swiss-Prot:B7Z368

Gene LinkOut

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Research Materials
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