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SPAG16-DT SPAG16 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100130451, updated on 8-Mar-2024

Summary

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Official Symbol
SPAG16-DTprovided by HGNC
Official Full Name
SPAG16 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:52674
See related
AllianceGenome:HGNC:52674
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
2q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (213275786..213284209, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (213756668..213765091, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (214140510..214148933, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373864 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:214052314-214053176 Neighboring gene uncharacterized LOC107985981 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:214053177-214054037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:214054900-214055760 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17066 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17065 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17064 Neighboring gene sperm associated antigen 16 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:214276253-214277452 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:214552640-214553482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17069 Neighboring gene microRNA 4438 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:214898800-214899778 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:214899779-214900755 Neighboring gene uncharacterized LOC101928084

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • AC079610.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144752.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW103829, HY006542, HY190362

  2. NR_161186.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079610

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    213275786..213284209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    213756668..213765091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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