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GALNT9-AS1 GALNT9 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100130238, updated on 10-Oct-2023

Summary

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Official Symbol
GALNT9-AS1provided by HGNC
Official Full Name
GALNT9 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56353
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in spleen (RPKM 3.3), thyroid (RPKM 1.6) and 2 other tissues See more
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Genomic context

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Location:
12q24.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (132275391..132280900)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (132328533..132334042)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (132851977..132857486)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5114 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5115 Neighboring gene long intergenic non-protein coding RNA 2361 Neighboring gene uncharacterized LOC105370091 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132703817-132704677 Neighboring gene MS43a minisatellite repeat instability region Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:132831859-132832379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132832380-132832899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132849568-132850462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132850463-132851355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132852165-132852941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132854851-132855501 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132860363-132861016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132861671-132862324 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:132863043-132864242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132899827-132900476 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:132903614-132904813 Neighboring gene uncharacterized LOC101928416 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:132920815-132922014 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:132949478-132949627 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132982751-132983387 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:132991529-132991667 Neighboring gene uncharacterized LOC105370092 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:133005261-133005795 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5116

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024563.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC148477, AK123118, BM984287, DA121414, DA629674

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    132275391..132280900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160007.1 Reference GRCh38.p14 PATCHES

    Range
    181751..187260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    132328533..132334042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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