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ARRDC3-AS1 ARRDC3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100129716, updated on 17-Sep-2024

Summary

Official Symbol
ARRDC3-AS1provided by HGNC
Official Full Name
ARRDC3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44145
See related
Ensembl:ENSG00000281357 AllianceGenome:HGNC:44145
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.5), bone marrow (RPKM 0.6) and 23 other tissues See more
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Genomic context

See ARRDC3-AS1 in Genome Data Viewer
Location:
5q14.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (91380347..91420715)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (91864199..91904554)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (90676164..90716532)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:90607093-90608292 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:90609644-90610843 Neighboring gene lung cancer associated transcript 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90627976-90628476 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:90634700-90635294 Neighboring gene ribosomal protein S18 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16171 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90679204-90679721 Neighboring gene arrestin domain containing 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:90783158-90783705 Neighboring gene RAB5C, member RAS oncogene family pseudogene 2 Neighboring gene uncharacterized LOC107986434

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • ARRDC3 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027435.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008799
    Related
    ENST00000625713.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    91380347..91420715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    91864199..91904554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)