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LOC100129434 uncharacterized LOC100129434 [ Homo sapiens (human) ]

Gene ID: 100129434, updated on 10-Oct-2023

Summary

Gene symbol
LOC100129434
Gene description
uncharacterized LOC100129434
See related
Ensembl:ENSG00000233251
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in placenta (RPKM 3.3), fat (RPKM 1.9) and 10 other tissues See more
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Genomic context

Location:
2p16.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (56173534..56185770, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (56170500..56182738, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (56400669..56412905, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374690 Neighboring gene MIR217 host gene Neighboring gene microRNA 216b Neighboring gene long intergenic non-protein coding RNA 1813 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:56346884-56347414 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11502 Neighboring gene coiled-coil domain containing 85A Neighboring gene RNA, 5S ribosomal pseudogene 93 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:56514747-56515946 Neighboring gene uncharacterized LOC101927213

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007743
    Related
    ENST00000668950.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    56173534..56185770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    56170500..56182738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)