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LINC01310 long intergenic non-protein coding RNA 1310 [ Homo sapiens (human) ]

Gene ID: 100128946, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01310provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1310provided by HGNC
Primary source
HGNC:HGNC:50501
See related
Ensembl:ENSG00000205632 AllianceGenome:HGNC:50501
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
WI2-81516E3.1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q13.32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (48866770..48898386)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (49361735..49393333)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (49262582..49294198)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene TAFA chemokine like family member 5 Neighboring gene uncharacterized LOC124900480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48972958-48973464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49001381-49002302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49024390-49025219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49025220-49026048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49026049-49026878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49030484-49031058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49031059-49031631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49036799-49037318 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49043107-49043284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49062165-49062666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49062667-49063166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49064778-49065430 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63487 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63485 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49096987-49097494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49097495-49098002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49107619-49108118 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49113659-49114248 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49114249-49114838 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:49191875-49192796 Neighboring gene microRNA 4535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49232881-49233408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49252199-49252698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49264603-49265104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49265105-49265604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49267795-49268295 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49298268-49298768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49315147-49315667 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63573 Neighboring gene MPRA-validated peak4515 silencer Neighboring gene Sharpr-MPRA regulatory region 10948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49355769-49356614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49411058-49411949 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49414603-49415102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49416620-49417120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49417121-49417621 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:49430339-49431262 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49444419-49444575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49472572-49473132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49473133-49473691 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:49479476-49480675 Neighboring gene uncharacterized LOC105373086 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49492353-49492524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49492933-49493434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49493435-49493934 Neighboring gene neuronal hypoxia inducible, placenta associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ32282

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038944.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX324178, KF459722
    Related
    ENST00000380981.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    48866770..48898386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    49361735..49393333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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