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LINC02324 long intergenic non-protein coding RNA 2324 [ Homo sapiens (human) ]

Gene ID: 100128233, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02324provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2324provided by HGNC
Primary source
HGNC:HGNC:53244
See related
Ensembl:ENSG00000255002 AllianceGenome:HGNC:53244
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02324 in Genome Data Viewer
Location:
14q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (65212893..65222347, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (59417752..59427206, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (65679611..65689065, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RNA, U2 small nuclear 14, pseudogene Neighboring gene uncharacterized LOC124903329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8542 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8543 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8544 Neighboring gene Sharpr-MPRA regulatory region 433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:65653928-65654630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:65654631-65655332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8549 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:65679956-65680506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8550 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancers GRCh37_chr14:65691562-65692442 and GRCh37_chr14:65692443-65693322 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5848 Neighboring gene IGF like family receptor 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:65704769-65705337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:65722191-65722692 Neighboring gene ribosomal protein L21 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTD-2509G16.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103769.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX161428
    Related
    ENST00000531609.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    65212893..65222347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    59417752..59427206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases