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UST-AS1 UST antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128176, updated on 10-Oct-2023

Summary

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Official Symbol
UST-AS1provided by HGNC
Official Full Name
UST antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40802
See related
AllianceGenome:HGNC:40802
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.3), adrenal (RPKM 0.6) and 19 other tissues See more
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Genomic context

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Location:
6q25.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (148954259..148964684, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (150154072..150164498, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (149275395..149285820, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:149069303-149069804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:149069805-149070304 Neighboring gene uncharacterized LOC107986659 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149081854-149082604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25238 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:149090389-149091019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25239 Neighboring gene uronyl 2-sulfotransferase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:149139935-149140821 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149184983-149185492 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17654 Neighboring gene Sharpr-MPRA regulatory region 942 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:149194421-149195620 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17655 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149245080-149245698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:149284708-149285284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149285285-149285861 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:149290736-149291326 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:149291327-149291917 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149293308-149294306 Neighboring gene NANOG hESC enhancer GRCh37_chr6:149301302-149301803 Neighboring gene uncharacterized LOC124901424 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149335755-149336309 Neighboring gene UST antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038408.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI024299, AL357992, BC034817

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    148954259..148964684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    150154072..150164498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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