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SUMO2P6 SUMO2 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100127922, updated on 17-Sep-2024

Summary

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Official Symbol
SUMO2P6provided by HGNC
Official Full Name
SUMO2 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:39016
See related
AllianceGenome:HGNC:39016
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SUMO2P6 in Genome Data Viewer
Location:
5q35.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174561691..174562262)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175102638..175103209)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173988694..173989265)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1411 Neighboring gene uncharacterized LOC105377739 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:173958925-173960124 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:173999018-174000217 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174035513-174036138 Neighboring gene uncharacterized LOC105377740 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:174056950-174057177 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • SMT3 suppressor of mif two 3 homolog 2 pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027875.2 

    Range
    101..672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    174561691..174562262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    175102638..175103209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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