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fut5 fucosyltransferase 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127585, updated on 25-Apr-2024

Summary

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Official Symbol
fut5provided by Xenbase
Official Full Name
fucosyltransferase 5provided by Xenbase
Primary source
Xenbase:XB-GENE-5886482
See related
Ensembl:ENSXETG00000033979
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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See fut5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (24166252..24173661, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (14808948..14815507, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene PRKC apoptosis WT1 regulator protein Neighboring gene alpha-(1,3)-fucosyltransferase 6 Neighboring gene von Willebrand factor C and EGF domains Neighboring gene transfer RNA alanine (anticodon AGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fucosyltransferase 5 (alpha (1,3) fucosyltransferase)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112948.1 → NP_001106419.2  fucosyltransferase 5 (alpha (1,3) fucosyltransferase)

    Status: VALIDATED

    Source sequence(s)
    BC153357
    UniProtKB/TrEMBL
    A0A8J0Q996, A8E4W7
    Conserved Domains (2) summary
    pfam00852
    Location:188 → 357
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:65 → 172
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    24166252..24173661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899776.1 → XP_031755636.1  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q647, A8E4W7
    Related
    ENSXETP00000110431.1, ENSXETT00000113619.1
    Conserved Domains (2) summary
    pfam00852
    Location:186 → 355
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:63 → 170
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  2. XM_031899777.1 → XP_031755637.1  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X2

    UniProtKB/TrEMBL
    A0A8J1JCN0, A8E4W7
    Conserved Domains (2) summary
    pfam00852
    Location:177 → 346
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:54 → 161
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  3. XM_018092897.2 → XP_017948386.2  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q647, A8E4W7
    Related
    ENSXETP00000104262.1, ENSXETT00000121417.1
    Conserved Domains (2) summary
    pfam00852
    Location:186 → 355
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:63 → 170
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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