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ITPK1 inositol phosphate kinase [ Glycine max (soybean) ]

Gene ID: 100127430, updated on 18-Sep-2024

Summary

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Gene symbol
ITPK1
Gene description
inositol phosphate kinase
Locus tag
GLYMA_16G092200v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmItpk1
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Genomic context

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See ITPK1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (14798566..14800066, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (14695453..14696953, complement)

Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene transcription factor MYB53 Neighboring gene uncharacterized LOC121173673 Neighboring gene uncharacterized LOC106796373 Neighboring gene uncharacterized LOC106796381

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metabolic and signaling properties of an Itpk gene family in Glycine max. Stiles AR, et al. FEBS Lett, 2008 Jun 11. PMID 18474240, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 6-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-3,4,5,6-tetrakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol trisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol-tetrakisphosphate 1-kinase 1
Names
Inositol 1,3,4-trisphosphate 5/6-kinase 1
Inositol-hexakisphosphate 5-kinase
Inositol-triphosphate 5/6-kinase 1
Ins(1,3,4)P(3) 5/6-kinase 1
inositol-1,4,3-tris phosphate 5/6 kinase
NP_001237829.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001250900.2 → NP_001237829.1  inositol-tetrakisphosphate 1-kinase 1

    See identical proteins and their annotated locations for NP_001237829.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04005719, EU033958
    UniProtKB/Swiss-Prot
    A7X657
    UniProtKB/TrEMBL
    W6FJ05
    Conserved Domains (1) summary
    PLN02941
    Location:1 → 313
    PLN02941; inositol-tetrakisphosphate 1-kinase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    14798566..14800066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7X657.1 GenPept UniProtKB/Swiss-Prot:A7X657

Gene LinkOut

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