ninj1.S ninjurin 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ninj1.S
Official Full Name: ninjurin 1 S homeolog
Primary source: Xenbase:XB-GENE-1027810
Locus tag: XELAEV_18002568mg
See related: AllianceGenome:Xenbase:XB-GENE-1027810
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ninj1
Summary: Predicted to act upstream of or within cell adhesion and tissue regeneration. Predicted to be located in membrane. Orthologous to human NINJ1 (ninjurin 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4S

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (130636250..130651163, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016694823.1 (467273..482264, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tissue regeneration	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ninjurin 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110731.1 → NP_001104201.1 ninjurin 1 S homeolog

See identical proteins and their annotated locations for NP_001104201.1

Status: PROVISIONAL

Source sequence(s)

BC153765

UniProtKB/TrEMBL

A8E5Y6

Conserved Domains (1) summary

pfam04923
Location:30 → 130

Ninjurin; Ninjurin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

130636250..130651163 complement

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GenBank, FASTA, Sequence Viewer (Graphics)