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CD4 CD4 molecule [ Meleagris gallopavo (turkey) ]

Gene ID: 100126554, updated on 14-Dec-2023

Summary

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Gene symbol
CD4
Gene description
CD4 molecule
See related
Ensembl:ENSMGAG00000014113
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
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Genomic context

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See CD4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 1 NC_015011.2 (75588035..75599609)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 1 NC_015011.1 (80868166..80879377)

Chromosome 1 - NC_015011.2Genomic Context describing neighboring genes Neighboring gene parathymosin Neighboring gene lymphocyte activating 3 Neighboring gene myeloid leukemia factor 2 Neighboring gene COP9 signalosome subunit 7A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of reagents to study the turkey's immune response: Identification and molecular cloning of turkey CD4, CD8alpha and CD28. Powell F, et al. Dev Comp Immunol, 2009 Apr. PMID 19013189
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interleukin-15-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD4 molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303196.1 → NP_001290125.1  CD4 molecule precursor

    See identical proteins and their annotated locations for NP_001290125.1

    Status: PROVISIONAL

    Source sequence(s)
    AM884253
    UniProtKB/TrEMBL
    A0A803XZE0, A7WPR9
    Related
    ENSMGAP00000014929.3, ENSMGAT00000015872.3
    Conserved Domains (3) summary
    smart00410
    Location:29 → 129
    IG_like; Immunoglobulin like
    pfam12104
    Location:468 → 487
    Tcell_CD4_C; T cell CD4 receptor C terminal region
    cl11960
    Location:125 → 220
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015011.2 Reference Turkey_5.1 Primary Assembly

    Range
    75588035..75599609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010717880.3 → XP_010716182.1  CD4 molecule isoform X1

    UniProtKB/TrEMBL
    A0A803XZE0, G1NMU4
    Conserved Domains (2) summary
    pfam12104
    Location:468 → 487
    Tcell_CD4_C; T cell CD4 receptor C terminal region
    cl11960
    Location:125 → 220
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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