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RPSA ribosomal protein SA [ Ovis aries (sheep) ]

Gene ID: 100125628, updated on 10-Oct-2024

Summary

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Gene symbol
RPSA
Gene description
ribosomal protein SA
See related
EnsemblRapid:ENSOARG00020018166
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Also known as
LamR1
Orthologs
human mouse all
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Genomic context

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See RPSA in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 19 NC_056072.1 (12688141..12701453)

Chromosome 19 - NC_056072.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 38 Neighboring gene caspase-14 Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene uncharacterized LOC105603379 Neighboring gene myelin associated oligodendrocyte basic protein Neighboring gene myosin VIIA and Rab interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056072.1 Chromosome 19 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of full-length coding sequence (CDS) of the ovine 37/67-kDa laminin receptor (RPSA). Qiao J, et al. Mol Biol Rep, 2009 Nov. PMID 19105045
  2. Variable levels of 37-kDa/67-kDa laminin receptor (RPSA) mRNA in ovine tissues: potential contribution to the regulatory processes of PrPSc propagation? Qiao JW, et al. Anim Biotechnol, 2009. PMID 19544211
  3. Structural and functional analysis of the ovine laminin receptor gene (RPSA): Possible involvement of the LRP/LR protein in scrapie response. Marcos-Carcavilla A, et al. Mamm Genome, 2008 Feb. PMID 18202837

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Isolated the full-length coding sequence (CDS) of the ovine 37/67-kDa LRP/LR gene and submitted it to the GenBank under accession number EF649775, and identified four novel single nucleotide polymorphism sites.
    Title: Cloning and characterization of full-length coding sequence (CDS) of the ovine 37/67-kDa laminin receptor (RPSA).
  2. The observation that differences in LRP/LR mRNA expression levels are consistent with the corresponding variation in PrP(Sc) accumulation suggests that the 37-kDa/67-kDa laminin receptor may be involved in the regulation of PrP(Sc) propagation.
    Title: Variable levels of 37-kDa/67-kDa laminin receptor (RPSA) mRNA in ovine tissues: potential contribution to the regulatory processes of PrPSc propagation?
  3. The ovine laminin receptor gene (RPSA) was isolated, characterized, and mapped to ovine chromosome OAR19q13.
    Title: Structural and functional analysis of the ovine laminin receptor gene (RPSA): Possible involvement of the LRP/LR protein in scrapie response.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables laminin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS2
Names
37 kDa laminin receptor
37/67 kDa laminin receptor
37LRP
40S ribosomal protein SA
67 kDa laminin receptor
67LR
LBP/p40
LRP/LR
lamR
laminin receptor 1
laminin-binding protein precursor p40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105263.1 → NP_001098733.1  small ribosomal subunit protein uS2

    See identical proteins and their annotated locations for NP_001098733.1

    Status: PROVISIONAL

    Source sequence(s)
    EF649775
    UniProtKB/Swiss-Prot
    A6YRY8, B0L420
    Conserved Domains (3) summary
    PTZ00254
    Location:1 → 250
    PTZ00254; 40S ribosomal protein SA; Provisional
    TIGR01012
    Location:10 → 206
    uS2_euk_arch; ribosomal protein uS2, eukaryotic/archaeal form
    pfam16122
    Location:202 → 285
    40S_SA_C; 40S ribosomal protein SA C-terminus

RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056072.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    12688141..12701453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060402015.1 → XP_060257998.1  small ribosomal subunit protein uS2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7D3A0, D5HKJ4

  2. XM_060402014.1 → XP_060257997.1  small ribosomal subunit protein uS2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7D3A0, D5HKJ4
    Related
    ENSOARP00020023166.1, ENSOART00020027946.2

  3. XM_027957539.2 → XP_027813340.1  small ribosomal subunit protein uS2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7D3A0, D5HKJ4, W5Q7F4
    Conserved Domains (1) summary
    PTZ00254
    Location:1 → 250
    PTZ00254; 40S ribosomal protein SA; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6YRY8.1 GenPept UniProtKB/Swiss-Prot:A6YRY8

Gene LinkOut

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