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KCTD5 potassium channel tetramerization domain containing 5 [ Bos taurus (domestic cattle) ]

Gene ID: 100125308, updated on 4-Oct-2024

Summary

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Official Symbol
KCTD5provided by VGNC
Official Full Name
potassium channel tetramerization domain containing 5provided by VGNC
Primary source
VGNC:VGNC:30513
See related
BGD:BT28530; Ensembl:ENSBTAG00000040575
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See KCTD5 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (2102159..2122816)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase domain containing 2 Neighboring gene 3-phosphoinositide dependent protein kinase 1 Neighboring gene serine protease 27 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene serine protease 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC160111

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cullin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul3-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing protein KCTD5
Names
potassium channel tetramerisation domain containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103341.1 → NP_001096811.1  BTB/POZ domain-containing protein KCTD5

    See identical proteins and their annotated locations for NP_001096811.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142481
    UniProtKB/Swiss-Prot
    A5PKG7
    UniProtKB/TrEMBL
    A0AAA9SZW3
    Related
    ENSBTAP00000001047.4, ENSBTAT00000001047.6
    Conserved Domains (2) summary
    smart00225
    Location:45 → 145
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam02214
    Location:46 → 135
    BTB_2; BTB/POZ domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    2102159..2122816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005224377.5 → XP_005224434.1  BTB/POZ domain-containing protein KCTD5 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1NCQ9, A0AAA9SZW3
    Related
    ENSBTAP00000069205.1, ENSBTAT00000069652.2
    Conserved Domains (2) summary
    smart00225
    Location:45 → 145
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam02214
    Location:46 → 135
    BTB_2; BTB/POZ domain

  2. XM_010819041.4 → XP_010817343.1  BTB/POZ domain-containing protein KCTD5 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S464
    Related
    ENSBTAP00000079912.1, ENSBTAT00000124555.1
    Conserved Domains (2) summary
    smart00225
    Location:45 → 145
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam02214
    Location:46 → 135
    BTB_2; BTB/POZ domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A5PKG7.1 GenPept UniProtKB/Swiss-Prot:A5PKG7

Gene LinkOut

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Molecular Biology Databases
Research Materials