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rmc1 regulator of MON1-CCZ1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124886, updated on 4-Nov-2024

Summary

Official Symbol
rmc1provided by Xenbase
Official Full Name
regulator of MON1-CCZ1provided by Xenbase
Primary source
Xenbase:XB-GENE-1003493
See related
Ensembl:ENSXETG00000010060 AllianceGenome:Xenbase:XB-GENE-1003493
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
wdr98; c18orf8
Summary
Predicted to act upstream of or within regulation of autophagy. Predicted to be part of Mon1-Ccz1 complex. Orthologous to human RMC1 (regulator of MON1-CCZ1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See rmc1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (98007759..98032909, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (94121256..94154534, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene vitamin K epoxide reductase complex subunit 1 like 1 Neighboring gene lamina-associated polypeptide 2 Neighboring gene uncharacterized LOC116408857 Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene phosphorylase kinase, gamma 1 (muscle)

Genomic regions, transcripts, and products

General protein information

Preferred Names
regulator of MON1-CCZ1 complex
Names
WD repeat domain 98

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102838.1NP_001096308.1  regulator of MON1-CCZ1 complex

    See identical proteins and their annotated locations for NP_001096308.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135661
    UniProtKB/TrEMBL
    A4IHS1, F6T1F0
    Related
    ENSXETP00000081885.2, ENSXETT00000079981.2
    Conserved Domains (1) summary
    pfam07035
    Location:473630
    Mic1; Colon cancer-associated protein Mic1-like

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    98007759..98032909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)