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csgalnact2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124741, updated on 17-Aug-2024

Summary

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Official Symbol
csgalnact2provided by Xenbase
Official Full Name
chondroitin sulfate N-acetylgalactosaminyltransferase 2provided by Xenbase
Primary source
Xenbase:XB-GENE-965079
See related
Ensembl:ENSXETG00000000615
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See csgalnact2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (50290610..50321783)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (44616673..44647305, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene uncharacterized XB5952892

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC121786

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2
Names
chondroitin sulfate GalNAcT-2
NP_001096192.1
XP_012821324.1
XP_012821325.1
XP_012821326.1
XP_012821328.1
XP_031760608.1
XP_031760609.1
XP_031760610.1
XP_031760611.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102722.1 → NP_001096192.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2

    See identical proteins and their annotated locations for NP_001096192.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135663
    UniProtKB/TrEMBL
    A4IHS3
    Conserved Domains (1) summary
    cl11394
    Location:139 → 372
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    50290610..50321783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012965871.3 → XP_012821325.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012821325.1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_012965872.3 → XP_012821326.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012821326.1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_012965874.3 → XP_012821328.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012821328.1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_012965870.3 → XP_012821324.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012821324.1

    UniProtKB/TrEMBL
    F7DU98
    Related
    ENSXETP00000001339.4, ENSXETT00000001339.5
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_031904748.1 → XP_031760608.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_031904749.1 → XP_031760609.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_031904750.1 → XP_031760610.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  8. XM_031904751.1 → XP_031760611.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    F7DU98
    Conserved Domains (1) summary
    cl11394
    Location:67 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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