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CYP2R1 cytochrome P450 family 2 subfamily R member 1 [ Sus scrofa (pig) ]

Gene ID: 100124375, updated on 17-Aug-2024

Summary

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Official Symbol
CYP2R1provided by VGNC
Official Full Name
cytochrome P450 family 2 subfamily R member 1provided by VGNC
Primary source
VGNC:VGNC:103552
See related
Ensembl:ENSSSCG00000013389
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 3.6), kidney (RPKM 2.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CYP2R1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (44375432..44394122)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (47676732..47695293, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene calcitonin receptor-stimulating peptide-2 Neighboring gene calcitonin-related polypeptide beta Neighboring gene calcitonin receptor-stimulating peptide 1-like Neighboring gene uncharacterized LOC110259296 Neighboring gene phosphodiesterase 3B Neighboring gene 40S ribosomal protein SA-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xenobiotic metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: vitamin D 25-hydroxylase
Names
cytochrome P450 2R1
cytochrome P450, family 2, subfamily R, polypeptide 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    44375432..44394122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003480731.4 → XP_003480779.2  LOW QUALITY PROTEIN: vitamin D 25-hydroxylase

    UniProtKB/TrEMBL
    A0A0H4ITY4, A0A287ABJ2, A0A4X1TKK9, A0A8D1URU3
    Related
    ENSSSCP00000041374.2, ENSSSCT00000052930.2
    Conserved Domains (1) summary
    pfam00067
    Location:40 → 497
    p450; Cytochrome P450
Nucleotide Protein Strain
Heading Accession and Version

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