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LOC100122141 irregular chiasm C-roughest protein [ Nasonia vitripennis (jewel wasp) ]

Gene ID: 100122141, updated on 1-Oct-2024

Summary

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Gene symbol
LOC100122141
Gene description
irregular chiasm C-roughest protein
See related
NASONIABASE:NV50153
Gene type
protein coding
RefSeq status
MODEL
Organism
Nasonia vitripennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
Orthologs
honey bee all
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Genomic context

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See LOC100122141 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (840529..913357, complement)
103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279650.1 (842466..913357, complement)

Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene Toll-like receptor 7 Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class M Neighboring gene synaptogyrin Neighboring gene lipid droplet biogenesis associated protein seipin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nvit_psr_1.1

Genomic

  1. NC_045761.1 Reference Nvit_psr_1.1

    Range
    840529..913357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008203560.4 → XP_008201782.1  irregular chiasm C-roughest protein isoform X2

    UniProtKB/TrEMBL
    A0A7M7H6W0
    Conserved Domains (7) summary
    cd00096
    Location:92 → 157
    Ig; Immunoglobulin domain
    smart00408
    Location:388 → 439
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:81 → 175
    IG_like; Immunoglobulin like
    pfam07679
    Location:295 → 370
    I-set; Immunoglobulin I-set domain
    pfam08205
    Location:182 → 272
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13895
    Location:299 → 371
    Ig_2; Immunoglobulin domain
    cl11960
    Location:458 → 552
    Ig; Immunoglobulin domain

  2. XM_008203558.4 → XP_008201780.1  irregular chiasm C-roughest protein isoform X1

    UniProtKB/TrEMBL
    A0A7M7LQ80
    Conserved Domains (7) summary
    cd00096
    Location:92 → 157
    Ig; Immunoglobulin domain
    smart00408
    Location:388 → 439
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:81 → 175
    IG_like; Immunoglobulin like
    pfam07679
    Location:295 → 370
    I-set; Immunoglobulin I-set domain
    pfam08205
    Location:182 → 272
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13895
    Location:299 → 371
    Ig_2; Immunoglobulin domain
    cl11960
    Location:458 → 552
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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