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Prp5 pre-mRNA processing factor 5 [ Nasonia vitripennis (jewel wasp) ]

Gene ID: 100119942, updated on 10-Oct-2024

Summary

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Gene symbol
Prp5
Gene description
pre-mRNA processing factor 5
See related
NASONIABASE:NV12932
Gene type
protein coding
RefSeq status
MODEL
Organism
Nasonia vitripennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
Orthologs
fruit fly honey bee all
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Genomic context

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See Prp5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (17768489..17774165, complement)
103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279651.1 (1385495..1391047, complement)

Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial Neighboring gene carboxylesterase clade D, member 2 Neighboring gene uncharacterized LOC107981190 Neighboring gene reversion-inducing-cysteine-rich protein with kazal motifs Neighboring gene uncharacterized LOC103315845 Neighboring gene uncharacterized LOC100678531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX46

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nvit_psr_1.1

Genomic

  1. NC_045761.1 Reference Nvit_psr_1.1

    Range
    17768489..17774165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032600932.1 → XP_032456823.1  probable ATP-dependent RNA helicase DDX46 isoform X1

    UniProtKB/TrEMBL
    A0A7M7TE35
    Conserved Domains (4) summary
    PTZ00121
    Location:81 → 375
    PTZ00121; MAEBL; Provisional
    COG0513
    Location:370 → 800
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17953
    Location:363 → 584
    DEADc_DDX46; DEAD-box helicase domain of DEAD box protein 46
    cl00098
    Location:935 → 1038
    KH-I; K homology (KH) RNA-binding domain, type I

  2. XM_032600933.1 → XP_032456824.1  probable ATP-dependent RNA helicase DDX46 isoform X2

    UniProtKB/TrEMBL
    A0A7M7R1E5
    Conserved Domains (3) summary
    COG0513
    Location:229 → 659
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17953
    Location:222 → 443
    DEADc_DDX46; DEAD-box helicase domain of DEAD box protein 46
    cd22473
    Location:794 → 897
    KH-I_DDX46; type I K homology (KH) RNA-binding domain found in DEAD box protein 46 (DDX46) and similar proteins

RNA

  1. XR_004345065.1 RNA Sequence

  2. XR_004345068.1 RNA Sequence

  3. XR_004345067.1 RNA Sequence

  4. XR_004345069.1 RNA Sequence

  5. XR_004345066.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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