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BPIFB1 BPI fold containing family B member 1 [ Sus scrofa (pig) ]

Gene ID: 100113426, updated on 17-Aug-2024

Summary

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Official Symbol
BPIFB1provided by VGNC
Official Full Name
BPI fold containing family B member 1provided by VGNC
Primary source
VGNC:VGNC:95739
See related
Ensembl:ENSSSCG00000007261
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 43.5) and mixtures (RPKM 8.9) See more
Orthologs
human mouse all
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Genomic context

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See BPIFB1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (36782307..36809756)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (41731739..41760090)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene BPI fold containing family A member 3 Neighboring gene BPI fold containing family A member 1 Neighboring gene long palate lung and nasal epithelium protein 5 Neighboring gene vomeromodulin-like Neighboring gene vomeromodulin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Distant cousins: genomic and sequence diversity within the BPI fold-containing (BPIF)/PLUNC protein family. Bingle CD, et al. Biochem Soc Trans, 2011 Aug. PMID 21787330
  2. Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Bingle CD, et al. Biochem Soc Trans, 2011 Aug. PMID 21787333, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BPI fold-containing family B member 1
Names
Von Ebner minor salivary gland protein 1
long palate lung and nasal epithelium protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101032.1 → NP_001094502.1  BPI fold-containing family B member 1 precursor

    See identical proteins and their annotated locations for NP_001094502.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ859015
    UniProtKB/TrEMBL
    A0A8D1C3I5, A0A8D1KXC5, A0A8D1VWM1, A0A8D2A8Q5, A7J149, F1S504
    Conserved Domains (2) summary
    cd00025
    Location:26 → 257
    BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
    cd00026
    Location:276 → 472
    BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    36782307..36809756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077173.1 → XP_020932832.1  BPI fold-containing family B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D1C3I5, A0A8D1KXC5, A0A8D1VWM1, A0A8D2A8Q5, A7J149, F1S504
    Related
    ENSSSCP00000007732.2, ENSSSCT00000007945.4
    Conserved Domains (2) summary
    cd00025
    Location:26 → 257
    BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
    cd00026
    Location:276 → 472
    BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

  2. XM_005672827.3 → XP_005672884.1  BPI fold-containing family B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1C3I5, A0A8D1VWM1, A0A8D2A8Q5
    Conserved Domains (2) summary
    cd00025
    Location:41 → 272
    BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
    cd00026
    Location:291 → 487
    BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
Nucleotide Protein
Heading Accession and Version

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