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ACOX1 acyl-CoA oxidase 1 [ Sus scrofa (pig) ]

Gene ID: 100113422, updated on 17-Aug-2024

Summary

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Official Symbol
ACOX1provided by VGNC
Official Full Name
acyl-CoA oxidase 1provided by VGNC
Primary source
VGNC:VGNC:85020
See related
Ensembl:ENSSSCG00000017198
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ACO
Expression
Broad expression in subcutaneous adipose (RPKM 56.8), liver (RPKM 48.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACOX1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (5450913..5479550)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (5472406..5484941, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene envoplakin Neighboring gene cyclin dependent kinase 3 Neighboring gene TEN1 subunit of CST complex Neighboring gene Fas binding factor 1 Neighboring gene mitochondrial ribosomal protein L38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables palmitoyl-CoA oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal acyl-coenzyme A oxidase 1
Names
acyl-CoA oxidase 1, palmitoyl
acyl-Coenzyme A oxidase 1, palmitoyl
palmitoyl acyl-CoA oxidase 1
NP_001094498.1
XP_020921674.1
XP_020921675.1
XP_020921676.1
XP_020921677.1
XP_020921678.1
XP_020921679.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101028.1 → NP_001094498.1  peroxisomal acyl-coenzyme A oxidase 1

    See identical proteins and their annotated locations for NP_001094498.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ842227
    UniProtKB/TrEMBL
    A0A481AZH8, A0A4X1UZE6, A7J0B0
    Conserved Domains (2) summary
    cd01150
    Location:3 → 638
    AXO; Peroxisomal acyl-CoA oxidase
    PLN02443
    Location:5 → 657
    PLN02443; acyl-coenzyme A oxidase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    5450913..5479550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066015.1 → XP_020921674.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X1

    UniProtKB/TrEMBL
    A0A480YT82, A0A4X1UXM4, A0A8D0U696
    Related
    ENSSSCP00000078658.1, ENSSSCT00000100542.1
    Conserved Domains (1) summary
    cd01150
    Location:3 → 638
    AXO; Peroxisomal acyl-CoA oxidase

  2. XM_021066018.1 → XP_020921677.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X4

    UniProtKB/TrEMBL
    A0A287BPG7, A0A4X1UZ28, A0A8D0P3H2
    Conserved Domains (1) summary
    cd01150
    Location:23 → 570
    AXO; Peroxisomal acyl-CoA oxidase

  3. XM_021066016.1 → XP_020921675.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0HZQ5, A0A8D1QBQ1
    Related
    ENSSSCP00000039871.2, ENSSSCT00000063680.3
    Conserved Domains (1) summary
    cd01150
    Location:2 → 600
    AXO; Peroxisomal acyl-CoA oxidase

  4. XM_021066017.1 → XP_020921676.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D1JL03, A0A8D1LJ40, A0A8D1UW94
    Related
    ENSSSCP00000018221.5, ENSSSCT00000018723.5
    Conserved Domains (1) summary
    cd01150
    Location:2 → 600
    AXO; Peroxisomal acyl-CoA oxidase

  5. XM_021066019.1 → XP_020921678.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X4

    UniProtKB/TrEMBL
    A0A287BPG7, A0A4X1UZ28, A0A8D0P3H2
    Related
    ENSSSCP00000035960.3, ENSSSCT00000052256.3
    Conserved Domains (1) summary
    cd01150
    Location:23 → 570
    AXO; Peroxisomal acyl-CoA oxidase

  6. XM_021066020.1 → XP_020921679.1  peroxisomal acyl-coenzyme A oxidase 1 isoform X4

    UniProtKB/TrEMBL
    A0A287BPG7, A0A4X1UZ28, A0A8D0P3H2
    Conserved Domains (1) summary
    cd01150
    Location:23 → 570
    AXO; Peroxisomal acyl-CoA oxidase
Nucleotide Protein Strain
Heading Accession and Version

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