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ATRN attractin [ Sus scrofa (pig) ]

Gene ID: 100101470, updated on 17-Aug-2024

Summary

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Official Symbol
ATRNprovided by VGNC
Official Full Name
attractinprovided by VGNC
Primary source
VGNC:VGNC:96479
See related
Ensembl:ENSSSCG00000007153
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 17.1), lung (RPKM 7.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: 17
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (32054240..32239576, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (36381687..36516383, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene GDNF family receptor alpha 4 Neighboring gene uncharacterized LOC110257419 Neighboring gene dynein axonemal assembly factor 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin
Names
mahogany

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    32054240..32239576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077392.1 → XP_020933051.1  attractin isoform X3

    UniProtKB/TrEMBL
    A0A8D1E8W2
    Conserved Domains (8) summary
    cd00041
    Location:119 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:87 → 117
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:1049 → 1094
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:541 → 596
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:919 → 970
    PSI; Plexin repeat
    cl02432
    Location:775 → 907
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl26060
    Location:545 → 620
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:314 → 478
    BTB; Broad-Complex, Tramtrack and Bric a brac

  2. XM_001927289.7 → XP_001927324.7  attractin isoform X1

    UniProtKB/TrEMBL
    A0A5K1UYV7, A0A8D1E8W2, A0A8D1ZQ08
    Conserved Domains (8) summary
    cd00041
    Location:119 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:87 → 117
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:1049 → 1094
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:541 → 596
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:919 → 970
    PSI; Plexin repeat
    cl02432
    Location:775 → 907
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl26060
    Location:545 → 620
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:314 → 478
    BTB; Broad-Complex, Tramtrack and Bric a brac

  3. XM_021077390.1 → XP_020933049.1  attractin isoform X1

    UniProtKB/TrEMBL
    A0A5K1UYV7, A0A8D1E8W2, A0A8D1ZQ08
    Conserved Domains (8) summary
    cd00041
    Location:119 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:87 → 117
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:1049 → 1094
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:541 → 596
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:919 → 970
    PSI; Plexin repeat
    cl02432
    Location:775 → 907
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl26060
    Location:545 → 620
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:314 → 478
    BTB; Broad-Complex, Tramtrack and Bric a brac

  4. XM_021077389.1 → XP_020933048.1  attractin isoform X1

    UniProtKB/TrEMBL
    A0A5K1UYV7, A0A8D1E8W2, A0A8D1ZQ08
    Related
    ENSSSCP00000029393.2, ENSSSCT00000035365.4
    Conserved Domains (8) summary
    cd00041
    Location:119 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:87 → 117
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:1049 → 1094
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:541 → 596
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:919 → 970
    PSI; Plexin repeat
    cl02432
    Location:775 → 907
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl26060
    Location:545 → 620
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:314 → 478
    BTB; Broad-Complex, Tramtrack and Bric a brac

  5. XM_021077391.1 → XP_020933050.1  attractin isoform X2

    UniProtKB/TrEMBL
    A0A8D1ZE29
    Conserved Domains (7) summary
    cd00041
    Location:119 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1049 → 1094
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:541 → 596
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:919 → 970
    PSI; Plexin repeat
    cl02432
    Location:775 → 907
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl26060
    Location:545 → 620
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:314 → 478
    BTB; Broad-Complex, Tramtrack and Bric a brac
Nucleotide Protein Strain
Heading Accession and Version

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