bbs12.L Bardet-Biedl syndrome 12 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: bbs12.L
Official Full Name: Bardet-Biedl syndrome 12 L homeolog
Primary source: Xenbase:XB-GENE-5962528
Locus tag: XELAEV_18005607mg
See related: EnsemblRapid:ENSXLAG00005003532
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: bbs12
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Genomic context

Location:: chromosome: 1L

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1L	NC_054371.1 (69987878..69993357, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1L	NC_030724.1 (59148266..59153742, complement)

Chromosome 1L - NC_054371.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chaperone-mediated protein complex assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within photoreceptor cell maintenance	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cilium	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: chaperonin-containing T-complex member BBS12

Names: bardet-Biedl syndrome 12 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001099878.1 → NP_001093348.1 chaperonin-containing T-complex member BBS12

See identical proteins and their annotated locations for NP_001093348.1

Status: PROVISIONAL

Source sequence(s)

BC142555

UniProtKB/Swiss-Prot

A5PKN5

UniProtKB/TrEMBL

A0A974DXA9

Related

ENSXLAP00005010514.1, ENSXLAT00005010680.1

Conserved Domains (2) summary

pfam00118
Location:209 → 514

Cpn60_TCP1; TCP-1/cpn60 chaperonin family

cl02777
Location:355 → 414

chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

69987878..69993357 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)