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cgl.2.L egg cortical granule lectin gene 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100101274, updated on 2-Oct-2024

Summary

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Official Symbol
cgl.2.L
Official Full Name
egg cortical granule lectin gene 2 L homeolog
Primary source
Xenbase:XB-GENE-22061760
Locus tag
XELAEV_18005061mg
See related
EnsemblRapid:ENSXLAG00005001165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See cgl.2.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (23303342..23309349)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (14509731..14538607)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene intelectin-1-like Neighboring gene lamina-associated polypeptide 2 Neighboring gene G protein-coupled receptor kinase 4 L homeolog Neighboring gene huntingtin L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Intelectin-1-like; uncharacterized protein LOC100101274
Names
1.L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099867.2 → NP_001093337.1  Intelectin-1-like precursor

    See identical proteins and their annotated locations for NP_001093337.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085052
    UniProtKB/TrEMBL
    A0A974I2J3, A0A974I2S3, Q5U4L0
    Related
    ENSXLAP00005003540.1, ENSXLAT00005003602.1
    Conserved Domains (1) summary
    cl00085
    Location:44 → 89
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    23303342..23309349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041573394.1 → XP_041429328.1  uncharacterized protein LOC100101274 isoform X1

    UniProtKB/TrEMBL
    A0A974I2J3, A0A974I2S3, Q5U4L0
    Conserved Domains (1) summary
    cl00085
    Location:44 → 89
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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