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CTNND1 catenin delta 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100089625, updated on 30-Apr-2024

Summary

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Gene symbol
CTNND1
Gene description
catenin delta 1
See related
Ensembl:ENSOANG00000009319
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See CTNND1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 3 NC_041730.1 (19092427..19142876, complement)

Chromosome 3 - NC_041730.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 5B21-like Neighboring gene small nucleolar RNA SNORA7 Neighboring gene microRNA mir-7417 Neighboring gene BTB domain containing 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041730.1 Chromosome 3 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin delta-1
Names
catenin (cadherin-associated protein), delta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041730.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    19092427..19142876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029059616.1 → XP_028915449.1  catenin delta-1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8N847, F7CZ62
    Related
    ENSOANP00000036965.1, ENSOANT00000059991.1
    Conserved Domains (3) summary
    smart00185
    Location:697 → 732
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  2. XM_029059618.1 → XP_028915451.1  catenin delta-1 isoform X4

    UniProtKB/TrEMBL
    F7CZ62
    Conserved Domains (3) summary
    smart00185
    Location:703 → 738
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  3. XM_029059617.1 → XP_028915450.1  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8NHT0, F7CZ62
    Related
    ENSOANP00000040239.1, ENSOANT00000069149.1
    Conserved Domains (3) summary
    smart00185
    Location:703 → 738
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  4. XM_029059613.1 → XP_028915446.1  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8N092, F7CZ62
    Conserved Domains (3) summary
    smart00185
    Location:703 → 738
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  5. XM_029059620.1 → XP_028915453.1  catenin delta-1 isoform X5

    UniProtKB/TrEMBL
    F7CZ62
    Conserved Domains (3) summary
    smart00185
    Location:602 → 637
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:339 → 380
    Arm; Armadillo/beta-catenin-like repeat

  6. XM_029059615.1 → XP_028915448.1  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8N092, F7CZ62
    Related
    ENSOANP00000034473.1, ENSOANT00000075592.1
    Conserved Domains (3) summary
    smart00185
    Location:703 → 738
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein
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