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SDC4 syndecan 4 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100084859, updated on 30-Apr-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
Ensembl:ENSOANG00000010559
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 8 NC_041735.1 (5059889..5088871)

Chromosome 8 - NC_041735.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114813908 Neighboring gene SYS1 golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041735.1 Chromosome 8 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041735.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    5059889..5088871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029071421.2 → XP_028927254.1  syndecan-4

    UniProtKB/TrEMBL
    A0A6I8NFN4, F7GD52
    Related
    ENSOANP00000039521.1
    Conserved Domains (2) summary
    TIGR00422
    Location:55 → 151
    valS; valyl-tRNA synthetase
    pfam01034
    Location:142 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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