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L1CAM L1 cell adhesion molecule [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100084300, updated on 30-Apr-2024

Summary

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Gene symbol
L1CAM
Gene description
L1 cell adhesion molecule
See related
Ensembl:ENSOANG00000009415
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See L1CAM in Genome Data Viewer
Location:
chromosome: 6
Exon count:
30
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 6 NC_041733.1 (19749358..19815927)

Chromosome 6 - NC_041733.1Genomic Context describing neighboring genes Neighboring gene caveolin-2 Neighboring gene arginine vasopressin receptor 2 Neighboring gene PDZ domain containing 4 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene signal sequence receptor subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041733.1 Chromosome 6 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041733.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    19749358..19815927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029067694.2 → XP_028923527.1  neural cell adhesion molecule L1 isoform X2

    UniProtKB/TrEMBL
    F7EYT9
    Related
    ENSOANP00000014971.2
    Conserved Domains (7) summary
    cd05845
    Location:137 → 231
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00060
    Location:815 → 904
    FN3; Fibronectin type 3 domain
    smart00409
    Location:437 → 517
    IG; Immunoglobulin
    cd00063
    Location:615 → 702
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13882
    Location:1145 → 1230
    Bravo_FIGEY; Bravo-like intracellular region
    pfam00041
    Location:718 → 799
    fn3; Fibronectin type III domain
    cl11960
    Location:350 → 425
    Ig; Immunoglobulin domain

  2. XM_029067692.2 → XP_028923525.1  neural cell adhesion molecule L1 isoform X1

    UniProtKB/TrEMBL
    F7EYT9
    Conserved Domains (7) summary
    cd05845
    Location:137 → 231
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00060
    Location:815 → 904
    FN3; Fibronectin type 3 domain
    smart00409
    Location:437 → 517
    IG; Immunoglobulin
    cd00063
    Location:615 → 702
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13882
    Location:1145 → 1234
    Bravo_FIGEY; Bravo-like intracellular region
    pfam00041
    Location:718 → 799
    fn3; Fibronectin type III domain
    cl11960
    Location:350 → 425
    Ig; Immunoglobulin domain

  3. XM_029067693.2 → XP_028923526.1  neural cell adhesion molecule L1 isoform X1

    UniProtKB/TrEMBL
    F7EYT9
    Conserved Domains (7) summary
    cd05845
    Location:137 → 231
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00060
    Location:815 → 904
    FN3; Fibronectin type 3 domain
    smart00409
    Location:437 → 517
    IG; Immunoglobulin
    cd00063
    Location:615 → 702
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13882
    Location:1145 → 1234
    Bravo_FIGEY; Bravo-like intracellular region
    pfam00041
    Location:718 → 799
    fn3; Fibronectin type III domain
    cl11960
    Location:350 → 425
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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