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ABLIM1 actin binding LIM protein 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100083142, updated on 30-Apr-2024

Summary

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Gene symbol
ABLIM1
Gene description
actin binding LIM protein 1
See related
Ensembl:ENSOANG00000001559
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See ABLIM1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
28
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 16 NC_041743.1 (27884096..28156543)

Chromosome 16 - NC_041743.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114817458 Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene actin filament associated protein 1 like 2 Neighboring gene von Willebrand factor A domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041743.1 Chromosome 16 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041743.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    27884096..28156543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029080393.2 → XP_028936226.1  actin-binding LIM protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8MYJ5
    Related
    ENSOANP00000033787.1
    Conserved Domains (6) summary
    smart00153
    Location:737 → 772
    VHP; Villin headpiece domain
    cd09327
    Location:22 → 73
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:78 → 133
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:149 → 200
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:208 → 263
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:299 → 736
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_029080392.2 → XP_028936225.1  actin-binding LIM protein 1 isoform X2

    UniProtKB/TrEMBL
    F7GCY5
    Related
    ENSOANP00000002485.5
    Conserved Domains (6) summary
    smart00153
    Location:738 → 773
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:150 → 201
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:209 → 264
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:300 → 737
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  3. XM_029080396.1 → XP_028936229.1  actin-binding LIM protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6I8N2D9
    Conserved Domains (5) summary
    smart00153
    Location:615 → 650
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 614
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  4. XM_029080391.1 → XP_028936224.1  actin-binding LIM protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8P1J9
    Conserved Domains (5) summary
    smart00153
    Location:657 → 692
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 656
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  5. XM_029080395.1 → XP_028936228.1  actin-binding LIM protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8NSH6
    Conserved Domains (5) summary
    smart00153
    Location:617 → 652
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 616
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  6. XM_029080400.1 → XP_028936233.1  actin-binding LIM protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A6I8N575
    Conserved Domains (5) summary
    smart00153
    Location:570 → 605
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 569
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  7. XM_029080399.1 → XP_028936232.1  actin-binding LIM protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A6I8P6G7
    Conserved Domains (5) summary
    smart00153
    Location:582 → 617
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 581
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  8. XM_029080403.1 → XP_028936236.1  actin-binding LIM protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A6I8N575
    Conserved Domains (5) summary
    smart00153
    Location:535 → 570
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:224 → 534
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  9. XM_029080394.1 → XP_028936227.1  actin-binding LIM protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8MYJ5
    Conserved Domains (5) summary
    smart00153
    Location:636 → 671
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 635
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  10. XM_029080398.1 → XP_028936231.1  actin-binding LIM protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A6I8N575
    Conserved Domains (5) summary
    smart00153
    Location:584 → 619
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 583
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  11. XM_029080397.1 → XP_028936230.1  actin-binding LIM protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A6I8NSH6
    Related
    ENSOANP00000043513.1, ENSOANT00000060843.1
    Conserved Domains (5) summary
    smart00153
    Location:591 → 626
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 590
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  12. XM_029080402.1 → XP_028936235.1  actin-binding LIM protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A6I8N575
    Related
    ENSOANP00000036304.1, ENSOANT00000052406.1
    Conserved Domains (5) summary
    smart00153
    Location:544 → 579
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 543
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  13. XM_029080401.1 → XP_028936234.1  actin-binding LIM protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A6I8P6G7
    Related
    ENSOANP00000047986.1, ENSOANT00000054517.1
    Conserved Domains (5) summary
    smart00153
    Location:556 → 591
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 555
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  14. XM_029080404.1 → XP_028936237.1  actin-binding LIM protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A6I8N575
    Conserved Domains (5) summary
    smart00153
    Location:509 → 544
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:198 → 508
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  15. XM_029080405.2 → XP_028936238.1  actin-binding LIM protein 1 isoform X15

    Conserved Domains (3) summary
    smart00153
    Location:498 → 533
    VHP; Villin headpiece domain
    pfam16182
    Location:60 → 497
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM
    cl02475
    Location:1 → 24
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
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