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SEMA6A semaphorin 6A [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100082422, updated on 30-Apr-2024

Summary

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Gene symbol
SEMA6A
Gene description
semaphorin 6A
See related
Ensembl:ENSOANG00000008223
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SEMA6A in Genome Data Viewer
Location:
chromosome: X5
Exon count:
26
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) X5 NC_041753.1 (25865561..25992672, complement)

Chromosome X5 - NC_041753.1Genomic Context describing neighboring genes Neighboring gene COMM domain containing 10 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114807924 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041753.1 Chromosome X5 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6A
Names
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041753.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    25865561..25992672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029054786.2 → XP_028910619.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    F7CGR4
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_029054794.2 → XP_028910627.1  semaphorin-6A isoform X2

    UniProtKB/TrEMBL
    A0A6I8NDS3, F7CGR4
    Related
    ENSOANP00000038926.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  3. XM_029054795.2 → XP_028910628.1  semaphorin-6A isoform X3

    UniProtKB/TrEMBL
    A0A6I8NS53
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  4. XM_029054796.2 → XP_028910629.1  semaphorin-6A isoform X4

    UniProtKB/TrEMBL
    A0A6I8N9B2, A0A6I8NS53
    Related
    ENSOANP00000037375.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  5. XM_029054797.2 → XP_028910630.1  semaphorin-6A isoform X5

    UniProtKB/TrEMBL
    A0A6I8NRV6, A0A6I8NS53
    Related
    ENSOANP00000043787.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  6. XM_029054789.2 → XP_028910622.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    F7CGR4
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  7. XM_029054787.2 → XP_028910620.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    F7CGR4
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  8. XM_029054788.2 → XP_028910621.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    F7CGR4
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  9. XM_029054798.2 → XP_028910631.1  semaphorin-6A isoform X6

    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    smart00423
    Location:514 → 547
    PSI; domain found in Plexins, Semaphorins and Integrins

  10. XM_007655583.4 → XP_007653773.1  semaphorin-6A isoform X8

    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat

  11. XM_007655582.4 → XP_007653772.1  semaphorin-6A isoform X7

    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat
Nucleotide Protein
Heading Accession and Version

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