U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CPSF4 cleavage and polyadenylation specific factor 4 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100081275, updated on 30-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
CPSF4
Gene description
cleavage and polyadenylation specific factor 4
See related
Ensembl:ENSOANG00000007729
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CPSF4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 2 NC_041729.1 (36366283..36378894, complement)

Chromosome 2 - NC_041729.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114809119 Neighboring gene ATP synthase membrane subunit f Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene BUD31 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041729.1 Chromosome 2 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cleavage and polyadenylation specificity factor subunit 4
Names
cleavage and polyadenylation specific factor 4, 30kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041729.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    36366283..36378894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029052868.2 → XP_028908701.1  cleavage and polyadenylation specificity factor subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A6I8NTJ0
    Related
    ENSOANP00000044347.1
    Conserved Domains (1) summary
    COG5084
    Location:25 → 209
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_029052858.2 → XP_028908691.1  cleavage and polyadenylation specificity factor subunit 4 isoform X1

    UniProtKB/TrEMBL
    F6PXL2
    Related
    ENSOANP00000012315.2
    Conserved Domains (1) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.