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SEMA4A semaphorin 4A [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100079247, updated on 30-Apr-2024

Summary

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Gene symbol
SEMA4A
Gene description
semaphorin 4A
See related
Ensembl:ENSOANG00000009659
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SEMA4A in Genome Data Viewer
Location:
chromosome: X5
Exon count:
14
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) X5 NC_041753.1 (288120..299178, complement)

Chromosome X5 - NC_041753.1Genomic Context describing neighboring genes Neighboring gene polyamine-modulated factor 1 Neighboring gene solute carrier family 25 member 44 Neighboring gene lamin A/C Neighboring gene G-patch domain containing 4 Neighboring gene NAD(P)HX epimerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041753.1 Chromosome X5 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4A
Names
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041753.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    288120..299178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029056059.2 → XP_028911892.2  semaphorin-4A isoform X2

    UniProtKB/TrEMBL
    F6TRJ5
    Conserved Domains (2) summary
    smart00423
    Location:496 → 528
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:51 → 495
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_029056061.2 → XP_028911894.1  semaphorin-4A isoform X1

    Conserved Domains (3) summary
    smart00423
    Location:496 → 528
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:577 → 651
    Ig; Immunoglobulin domain
    cl15693
    Location:51 → 495
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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