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SMPD4 sphingomyelin phosphodiesterase 4 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100079000, updated on 30-Apr-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSOANG00000010539
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
21
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 21 NC_041748.1 (16858594..16889716)

Chromosome 21 - NC_041748.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin lambda-like polypeptide 1 Neighboring gene zinc finger protein 92 homolog Neighboring gene coiled-coil domain containing 74B Neighboring gene uncharacterized LOC114806118 Neighboring gene sushi domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041748.1 Chromosome 21 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4
Names
sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041748.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    16858594..16889716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029048999.2 → XP_028904832.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6I8NQV1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_029049001.2 → XP_028904834.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6I8NQV1
    Related
    ENSOANP00000043415.1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_029049002.2 → XP_028904835.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6I8NJ49
    Related
    ENSOANP00000040711.1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 742
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
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