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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100078603, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
See related
Ensembl:ENSOANG00000008428
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 9 NC_041736.1 (44989149..45087172, complement)

Chromosome 9 - NC_041736.1Genomic Context describing neighboring genes Neighboring gene taspase 1 Neighboring gene isthmin 1 Neighboring gene uncharacterized LOC114814168 Neighboring gene uncharacterized LOC114814330

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041736.1 Chromosome 9 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041736.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    44989149..45087172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039913180.1 → XP_039769114.1  serine palmitoyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8N373
    Conserved Domains (1) summary
    cl18945
    Location:57 → 547
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_029071631.2 → XP_028927464.1  serine palmitoyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I8PFS1
    Related
    ENSOANP00000050893.1
    Conserved Domains (1) summary
    PLN02483
    Location:36 → 526
    PLN02483; serine palmitoyltransferase
Nucleotide Protein
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