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TRPC4 transient receptor potential cation channel subfamily C member 4 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100078427, updated on 30-Apr-2024

Summary

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Gene symbol
TRPC4
Gene description
transient receptor potential cation channel subfamily C member 4
See related
Ensembl:ENSOANG00000015506
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See TRPC4 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 20 NC_041747.1 (5938092..6053134, complement)

Chromosome 20 - NC_041747.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114805822 Neighboring gene uncharacterized LOC103170456 Neighboring gene periostin Neighboring gene ubiquitin fold modifier 1 Neighboring gene FRAS1 related extracellular matrix 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041747.1 Chromosome 20 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041747.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    5938092..6053134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007668543.4 → XP_007666733.2  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    F6XZZ3
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  2. XM_007668545.4 → XP_007666735.2  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    F6XZZ3
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  3. XM_029047969.2 → XP_028903802.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    F6XZZ3
    Related
    ENSOANP00000024418.2
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  4. XM_029047970.2 → XP_028903803.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    F6XZZ3
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  5. XM_029047971.2 → XP_028903804.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    F6XZZ3
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  6. XM_029047972.2 → XP_028903805.1  short transient receptor potential channel 4 isoform X2

    Conserved Domains (1) summary
    TIGR00870
    Location:1 → 329
    trp; transient-receptor-potential calcium channel protein
Nucleotide Protein
Heading Accession and Version

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