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PLXNB1 plexin B1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100078327, updated on 30-Apr-2024

Summary

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Gene symbol
PLXNB1
Gene description
plexin B1
See related
Ensembl:ENSOANG00000004295
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See PLXNB1 in Genome Data Viewer
Location:
chromosome: X1
Exon count:
27
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) X1 NC_041749.1 (87210065..87252263)

Chromosome X1 - NC_041749.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120638038 Neighboring gene ATR interacting protein Neighboring gene uncharacterized LOC100084440 Neighboring gene coiled-coil domain containing 51 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114806398 Neighboring gene small nucleolar RNA SNORA7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041749.1 Chromosome X1 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041749.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    87210065..87252263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029051106.1 → XP_028906939.1  plexin-B1

    UniProtKB/TrEMBL
    A0A6I8NPA3
    Related
    ENSOANP00000047942.1, ENSOANT00000054566.1
    Conserved Domains (3) summary
    pfam08337
    Location:872 → 1413
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:471 → 559
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:29 → 421
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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