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UMOD uromodulin [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100077393, updated on 30-Apr-2024

Summary

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Gene symbol
UMOD
Gene description
uromodulin
See related
Ensembl:ENSOANG00000014305
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See UMOD in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 2 NC_041729.1 (46682884..46704725)

Chromosome 2 - NC_041729.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103166684 Neighboring gene acyl-coenzyme A synthetase ACSM5, mitochondrial Neighboring gene pancreatic secretory granule membrane major glycoprotein GP2-like Neighboring gene uncharacterized LOC114809068

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041729.1 Chromosome 2 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neutrophil migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uromodulin
Names
uromodulin pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041729.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    46682884..46704725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029057855.1 → XP_028913688.1  uromodulin

    UniProtKB/TrEMBL
    A0A6I8NZJ5, F7C6B2
    Related
    ENSOANP00000046287.1, ENSOANT00000071956.1
    Conserved Domains (3) summary
    smart00179
    Location:63 → 96
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:115 → 145
    EGF_3; EGF domain
    pfam00100
    Location:332 → 579
    Zona_pellucida; Zona pellucida-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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