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UNC5B unc-5 netrin receptor B [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100077372, updated on 30-Apr-2024

Summary

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Gene symbol
UNC5B
Gene description
unc-5 netrin receptor B
See related
Ensembl:ENSOANG00000004338
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See UNC5B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 3 NC_041730.1 (85983002..86091992, complement)

Chromosome 3 - NC_041730.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 29 member 3 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene U6 spliceosomal RNA Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041730.1 Chromosome 3 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables netrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in netrin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin receptor UNC5B
Names
unc-5 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041730.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    85983002..86091992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029060578.1 → XP_028916411.1  netrin receptor UNC5B isoform X2

    UniProtKB/TrEMBL
    A0A6I8PAK6
    Conserved Domains (5) summary
    smart00218
    Location:552 → 651
    ZU5; Domain present in ZO-1 and Unc5-like netrin receptors
    cd08802
    Location:865 → 948
    Death_UNC5B; Death domain found in Uncoordinated-5B
    smart00209
    Location:263 → 311
    TSP1; Thrombospondin type 1 repeats
    pfam17217
    Location:698 → 837
    UPA; UPA domain
    cl11960
    Location:171 → 257
    Ig; Immunoglobulin domain

  2. XM_029060580.1 → XP_028916413.1  netrin receptor UNC5B isoform X4

    UniProtKB/TrEMBL
    A0A6I8PAK6
    Related
    ENSOANP00000051448.1, ENSOANT00000050894.1
    Conserved Domains (5) summary
    smart00218
    Location:542 → 641
    ZU5; Domain present in ZO-1 and Unc5-like netrin receptors
    cd08802
    Location:855 → 938
    Death_UNC5B; Death domain found in Uncoordinated-5B
    smart00209
    Location:263 → 311
    TSP1; Thrombospondin type 1 repeats
    pfam17217
    Location:688 → 827
    UPA; UPA domain
    cl11960
    Location:171 → 257
    Ig; Immunoglobulin domain

  3. XM_029060579.1 → XP_028916412.1  netrin receptor UNC5B isoform X3

    UniProtKB/TrEMBL
    A0A6I8PAK6
    Conserved Domains (5) summary
    smart00218
    Location:551 → 650
    ZU5; Domain present in ZO-1 and Unc5-like netrin receptors
    cd08802
    Location:864 → 947
    Death_UNC5B; Death domain found in Uncoordinated-5B
    smart00209
    Location:263 → 311
    TSP1; Thrombospondin type 1 repeats
    pfam17217
    Location:697 → 836
    UPA; UPA domain
    cl11960
    Location:171 → 257
    Ig; Immunoglobulin domain

  4. XM_029060576.1 → XP_028916409.1  netrin receptor UNC5B isoform X1

    UniProtKB/TrEMBL
    A0A6I8PAK6, F6S3G7
    Related
    ENSOANP00000006880.3, ENSOANT00000006882.3
    Conserved Domains (5) summary
    smart00218
    Location:553 → 652
    ZU5; Domain present in ZO-1 and Unc5-like netrin receptors
    cd08802
    Location:866 → 949
    Death_UNC5B; Death domain found in Uncoordinated-5B
    smart00209
    Location:263 → 311
    TSP1; Thrombospondin type 1 repeats
    pfam17217
    Location:699 → 838
    UPA; UPA domain
    cl11960
    Location:171 → 257
    Ig; Immunoglobulin domain
Nucleotide Protein
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