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LOC100075215 histo-blood group ABO system transferase 2-like [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100075215, updated on 30-Apr-2024

Summary

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Gene symbol
LOC100075215
Gene description
histo-blood group ABO system transferase 2-like
See related
Ensembl:ENSOANG00000045924
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
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Genomic context

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See LOC100075215 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 4 NC_041731.1 (36917163..36934325)

Chromosome 4 - NC_041731.1Genomic Context describing neighboring genes Neighboring gene histo-blood group ABO system transferase 2-like Neighboring gene small nucleolar RNA SNORA7 Neighboring gene histo-blood group ABO system transferase-like Neighboring gene surfeit 6 Neighboring gene mediator complex subunit 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041731.1 Chromosome 4 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase 1-like; histo-blood group ABO system transferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041731.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    36917163..36934325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007672175.3 → XP_007670365.2  histo-blood group ABO system transferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A6I8NJ05
    Related
    ENSOANP00000041199.1
    Conserved Domains (1) summary
    pfam03414
    Location:61 → 350
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_001506685.5 → XP_001506735.3  histo-blood group ABO system transferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A6I8NJ05
    Conserved Domains (1) summary
    pfam03414
    Location:62 → 351
    Glyco_transf_6; Glycosyltransferase family 6

  3. XM_029062609.2 → XP_028918442.1  histo-blood group ABO system transferase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A6I8NJ05
    Conserved Domains (1) summary
    pfam03414
    Location:39 → 328
    Glyco_transf_6; Glycosyltransferase family 6

  4. XM_029062610.2 → XP_028918443.1  histo-blood group ABO system transferase 2-like isoform X4

    UniProtKB/TrEMBL
    A0A6I8NJ05
    Conserved Domains (1) summary
    pfam03414
    Location:31 → 317
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
Heading Accession and Version

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