U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHST1 carbohydrate sulfotransferase 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100074919, updated on 30-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
CHST1
Gene description
carbohydrate sulfotransferase 1
See related
Ensembl:ENSOANG00000051109
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHST1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 3 NC_041730.1 (22818172..22841813)

Chromosome 3 - NC_041730.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane protein 263-like Neighboring gene uncharacterized LOC103170358 Neighboring gene small nucleolar RNA SNORA7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041730.1 Chromosome 3 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
carbohydrate sulfotransferase 1
Names
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041730.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    22818172..22841813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029059219.1 → XP_028915052.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A6I8NWC3
    Conserved Domains (1) summary
    pfam00685
    Location:212 → 394
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_029059218.1 → XP_028915051.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A6I8NWC3
    Related
    ENSOANP00000045215.1, ENSOANT00000072090.1
    Conserved Domains (1) summary
    pfam00685
    Location:212 → 394
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.