SEMA3D semaphorin 3D [Ornithorhynchus anatinus (platypus)] - Gene

Summary

Gene symbol: SEMA3D
Gene description: semaphorin 3D
See related: Ensembl:ENSOANG00000013043
Gene type: protein coding
RefSeq status: MODEL
Organism: Ornithorhynchus anatinus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
105	current	mOrnAna1.pri.v4 (GCF_004115215.2)	13	NC_041740.1 (30640009..30811240, complement)

Chromosome 13 - NC_041740.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_041740.1 Chromosome 13 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables chemorepellent activity	IEA Inferred from Electronic Annotation more info	PubMed
enables semaphorin receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in axon guidance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative chemotaxis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of axon extension involved in axon guidance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in neural crest cell migration	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of cell migration	IEA Inferred from Electronic Annotation more info	PubMed
involved_in semaphorin-plexin signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: semaphorin-3D

Names: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

NC_041740.1 Reference mOrnAna1.pri.v4 Primary Assembly

Range

30640009..30811240 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_007670948.3 → XP_007669138.1 semaphorin-3D isoform X1

See identical proteins and their annotated locations for XP_007669138.1

UniProtKB/TrEMBL

F7AVT1

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cd05871
Location:593 → 684

Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
XM_029077347.2 → XP_028933180.1 semaphorin-3D isoform X1

UniProtKB/TrEMBL

F7AVT1

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cd05871
Location:593 → 684

Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
XM_029077344.2 → XP_028933177.1 semaphorin-3D isoform X1

UniProtKB/TrEMBL

F7AVT1

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cd05871
Location:593 → 684

Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
XM_039913903.1 → XP_039769837.1 semaphorin-3D isoform X1

UniProtKB/TrEMBL

F7AVT1

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cd05871
Location:593 → 684

Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
XM_039913904.1 → XP_039769838.1 semaphorin-3D isoform X1

UniProtKB/TrEMBL

F7AVT1

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cd05871
Location:593 → 684

Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
XM_029077349.2 → XP_028933182.1 semaphorin-3D isoform X2

Conserved Domains (3) summary

cd11252
Location:59 → 532

Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

smart00423
Location:531 → 568

PSI; domain found in Plexins, Semaphorins and Integrins

cl11960
Location:594 → 634

Ig; Immunoglobulin domain