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SC5D sterol-C5-desaturase [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100073392, updated on 30-Apr-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
Ensembl:ENSOANG00000005098
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 11 NC_041738.1 (52349294..52363852, complement)

Chromosome 11 - NC_041738.1Genomic Context describing neighboring genes Neighboring gene sortilin related receptor 1 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114815054 Neighboring gene uncharacterized LOC114815056 Neighboring gene uncharacterized LOC114815055 Neighboring gene tubulin-specific chaperone cofactor E-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041738.1 Chromosome 11 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041738.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    52349294..52363852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029075159.2 → XP_028930992.1  lathosterol oxidase isoform X2

    UniProtKB/TrEMBL
    F7C6Y2
    Related
    ENSOANP00000008093.1
    Conserved Domains (1) summary
    COG3000
    Location:32 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  2. XM_029075158.2 → XP_028930991.1  lathosterol oxidase isoform X1

    Conserved Domains (1) summary
    COG3000
    Location:41 → 266
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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