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lrp2bp LRP2 binding protein [ Danio rerio (zebrafish) ]

Gene ID: 100073340, updated on 17-Sep-2024

Summary

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Official Symbol
lrp2bpprovided by ZNC
Official Full Name
LRP2 binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070615-41
See related
Ensembl:ENSDARG00000040478 AllianceGenome:ZFIN:ZDB-GENE-070615-41
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:165631
Summary
Predicted to be located in cytoplasm. Orthologous to human LRP2BP (LRP2 binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See lrp2bp in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (3944872..3961332)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (3837893..3854382)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487636 Neighboring gene transmembrane protein 271 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) Neighboring gene sorting nexin 25 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 6 Neighboring gene interferon regulatory factor 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. An antiapoptotic role of sorting nexin 7 is required for liver development in zebrafish. Xu L, et al. Hepatology, 2012 Jun. PMID 22213104
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LRP2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098776.1 → NP_001092246.1  LRP2-binding protein

    See identical proteins and their annotated locations for NP_001092246.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142915
    UniProtKB/Swiss-Prot
    A5PLI4
    Related
    ENSDARP00000134329.1, ENSDART00000170167.2
    Conserved Domains (4) summary
    smart00671
    Location:134 → 167
    SEL1; Sel1-like repeats
    COG0790
    Location:35 → 275
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:108 → 144
    SLR; SLR repeat [structural motif]
    pfam08238
    Location:207 → 241
    Sel1; Sel1 repeat

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    3944872..3961332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213144.1 → XP_068069245.1  LRP2-binding protein isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A5PLI4.1 GenPept UniProtKB/Swiss-Prot:A5PLI4

Gene LinkOut

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