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VPS26B VPS26, retromer complex component B [ Equus caballus (horse) ]

Gene ID: 100072880, updated on 17-Aug-2024

Summary

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Official Symbol
VPS26Bprovided by VGNC
Official Full Name
VPS26, retromer complex component Bprovided by VGNC
Primary source
VGNC:VGNC:24919
See related
Ensembl:ENSECAG00000044183
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See VPS26B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (43392844..43414411)

Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene junctional adhesion molecule 3 Neighboring gene non-SMC condensin II complex subunit D3 Neighboring gene acyl-CoA dehydrogenase family member 8 Neighboring gene thymocyte nuclear protein 1 Neighboring gene beta-galactosidase-1-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009150.3 Chromosome 7 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 26B
Names
vacuolar protein sorting 26 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009150.3 Reference EquCab3.0 Primary Assembly

    Range
    43392844..43414411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001502943.4 → XP_001502993.3  vacuolar protein sorting-associated protein 26B isoform X1

    UniProtKB/TrEMBL
    A0A5F5PX92
    Related
    ENSECAP00000020918.4, ENSECAT00000025153.4
    Conserved Domains (1) summary
    pfam03643
    Location:6 → 281
    Vps26; Vacuolar protein sorting-associated protein 26

  2. XM_023645164.1 → XP_023500932.1  vacuolar protein sorting-associated protein 26B isoform X2

    UniProtKB/TrEMBL
    A0A5F5PNI6
    Conserved Domains (1) summary
    pfam03643
    Location:6 → 281
    Vps26; Vacuolar protein sorting-associated protein 26
Nucleotide Protein
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Gene LinkOut

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