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PSD2 pleckstrin and Sec7 domain containing 2 [ Equus caballus (horse) ]

Gene ID: 100072453, updated on 17-Aug-2024

Summary

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Official Symbol
PSD2provided by VGNC
Official Full Name
pleckstrin and Sec7 domain containing 2provided by VGNC
Primary source
VGNC:VGNC:21928
See related
Ensembl:ENSECAG00000013590
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PSD2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 14 NC_009157.3 (36243228..36295187, complement)

Chromosome 14 - NC_009157.3Genomic Context describing neighboring genes Neighboring gene purine rich element binding protein A Neighboring gene neuregulin 2 Neighboring gene uncharacterized LOC111767796 Neighboring gene CXXC finger protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009157.3 Chromosome 14 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PH and SEC7 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009157.3 Reference EquCab3.0 Primary Assembly

    Range
    36243228..36295187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023617591.1 → XP_023473359.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  2. XM_023617588.1 → XP_023473356.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  3. XM_023617586.1 → XP_023473354.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  4. XM_023617584.1 → XP_023473352.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  5. XM_023617587.1 → XP_023473355.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  6. XM_023617585.1 → XP_023473353.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  7. XM_023617593.1 → XP_023473361.1  PH and SEC7 domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    F7A0D8
    Related
    ENSECAP00000011302.3, ENSECAT00000014168.3
    Conserved Domains (2) summary
    cd00171
    Location:300 → 465
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:511 → 631
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  8. XM_023617589.1 → XP_023473357.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  9. XM_023617592.1 → XP_023473360.1  PH and SEC7 domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A9L0RYU2
    Related
    ENSECAP00000067837.1, ENSECAT00000113034.1
    Conserved Domains (2) summary
    cd00171
    Location:300 → 465
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:511 → 634
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  10. XM_023617590.1 → XP_023473358.1  PH and SEC7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R762
    Conserved Domains (2) summary
    cd00171
    Location:300 → 466
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:512 → 635
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain
Nucleotide Protein
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